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This example runs PAUP on the input file input.nex that resides in the current working directory. A file (here we'll name it pbsjob) is created with the contents:
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#!/bin/bash
#PBS -c s
#PBS -j oe
#PBS -m ae
#PBS -N jobname
#PBS -M jc123456@jcu.edu.au
#PBS -l walltime=2000:00:00
echo "------------------------------------------------------"
echo " This job is allocated 1 cpu on "
cat $PBS_NODEFILE
echo "------------------------------------------------------"
echo "PBS: Submitted to $PBS_QUEUE@$PBS_O_HOST"
echo "PBS: Working directory is $PBS_O_WORKDIR"
echo "PBS: Job identifier is $PBS_JOBID"
echo "PBS: Job name is $PBS_JOBNAME"
echo "------------------------------------------------------"
cd $PBS_O_WORKDIR
source /etc/profile.d/modules.sh
module load paup
paup -n input.nex
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To submit the job for execution on a HPRC compute node simply enter the command:
If you know this job will require more than 4GB but less than 8GB of RAM, you could use the command:
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qsub -l nodes=1:ppn=2 pbsjob |
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| Single 1-CPU Job |
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| Single 1-CPU Job |
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